The third volume of the Life of Sir William Rowan Hamilton by Robert Perceval Graves (Dublin: Hodges, Figgis and Co., 1889) includes as an appendix a List of Papers, Memoirs, Addresses, and Books published by Sir William Rowan Hamilton, and of Notices of Communications.
(The full text of the mathematical papers published in Hamilton's lifetime is also available in a variety of formats including Plain TeX, DVI, PostScript and PDF.)
A list of References for William Rowan Hamilton is associated with the biography of Hamilton in The MacTutor History of Mathematics archive.
Links:
D.R. Wilkins